I had a couple apples this year on a 2019 graft to an Antonovka rootstock. It’s a healthy rootstock, seed-grown, not from a stool bed.
And I’ve found in planting seeds, Fuji seedlings are the least bothered by scab and rust of any I’ve tried to grow from seeds I saved myself. (And Opal is the pits, along with Granny Smith).
Yes, there is a difference in seeds for growing rootstocks.
But, I can’t tell you the best ones.